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Sufficient_Candy_883

2024-12-28 13:25:25

Any help with Fastqc results? [RNA-seq]

Sufficient_Candy_883

2024-12-17 11:57:14

RNA-seq corrupt data

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I am not sure I understand exactly what you are trying to do, but just to confirm the obvious. You are trying to decompress single FASTQ files right? or is it a compressed folder? If it’s a folder, that would be a tarball file and you can’t unzip like it’s a normal file

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Thank you for your reply! I have a compressed folder in ZIP format. Inside this main folder, there are multiple subfolders, and each subfolder contains two FASTA files. I was trying to decompress the main folder and then the subfolders. Then, the FASTA files would be available. The problem is that I cannot decompress the main folder due to an unespecific error (Windows) that seems to be because some files are corrupted. I don't know if it happens because I'm using Windows. I haven't tried to decompress it in the server (Bash) yet. Any suggestion?

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I don't know that it would matter, but are you doing this in a Linux environment? I wouldn't manipulate the files at all outside of one.

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I was doing this step in windows and I was going to upload the unzip files to a server (bash) with MOBAxterm and then continue the analysis there. Maybe i can try to do the whole process in the server

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