IC Card vs Tokyo Pass?

Hi all,

TLDR/EDIT: To clarify, I already bought the JR Pass, but I wanted to know whether to buy another pass (e.g Tokyo Subway Ticket) or just use a Suica Card in addition.

I will be going to Japan next month. I bought the JR Pass as I will be going to Osaka. I am aware that the JR Pass does not cover many lines in Tokyo, therefore I am trying to decide whether I should utilize a Suica/Passmo card rather than just buying a pass (such as the Tokyo 1/3 Day Pass).

Are you able to help me decide if using the IC card is better or buy a pass (not sure which pass to buy though - it is so overwhelming).Thank you in advance!

Here is my itinerary:

DAY 1 - TOKYO
  • Arriving midnight at Haneda Airport. Since trains are not running past midnight, I might sleep there till morning then do a day trip in Tokyo before my hotel check-in.
  • Minato (Zojo-ji Temple)
  • Ginza (Shopping)
  • Hotel at Roppongi

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DAY 2 - TOKYO
  • Visit Yokohama Ramen Museum
  • Visit Asakusa
    • Asakusa Shrine
    • Sensoji Temple
  • Maybe visit Akihabara
  • Go back to Roppongi hotel

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DAY 3 -TOKYO/KYOTO
  • Visit Nezu Shrine
  • Travel to Kyoto
  • Hotel near Kyoto Station

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DAY 4 - KYOTO/OSAKA
  • Visit Kiyomizu-Dera Temple
  • Gion
  • Yasaka Shrine
  • Travel to Osaka
  • Hotel near Shin-Osaka Station

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DAY 5 - OSAKA
  • Osaka Castle
  • Shinsekai
  • Dotonbori, Shinsaibashi and Amerikamura
  • Hotel near Shin-Osaka Station

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DAY 6 - OSAKA
  • Universal Studios
  • Travel back to Tokyo at night (unsure where yet)

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DAY 7 - TOKYO
  • Shibuya
  • Harajuku
  • Go to Hilton Airport for Hotel at Narita Airport